Biotechvana


ABOUT GPRO

GPRO Suite is a bioinformatic project developed and maintained by Biotechvana with the aim to provide Graphical User interface (GUI) customized solutions for omic data analysis in remote servers (the Cloud) or in the user PC.

The current version (2.n) includes six Client-Desktop applications and a server side infraestructure with distinct dependencies such as databases, scripts, and Command Line Interface (CLI) third party software allowing different pipelines and workflow combinations based on the State-of-the-Art. The applications have been designed with custom dedication of a particular omic theme. This is, "DeNovo characterization of new genomes and transcriptomes", "RNAseq studies", "analysis of variants", "Sequence analysis and editing", "Statistics and testing hypothesis", ·Data integration and annotation".

The six GPRO applications (the client side) and are Java applications that can be installed in any PC under the most common operating systems, MACOs, Windows and Linux.

The Server side infraestructure can be installed in remote servers (as a cloud resource) or in the user PC provided that it has RAM enough.

Of the six applications four of them (DeNovoSeq, VariantSeq, RNASeq and STATools) are coupled with the server side allowing the user to run and manage server side pipelines and workflows via user-friendly interfaces customized for specific topics. The two other applications (Worksheet and SeqEditor) work locally in the user PC but may have additional funtions and tools connected with the server side

Usage

The six Applications of the GPRO suite can be downloaded here. See also the manuals (links to the right) and the dependencies for usage detailed below.

GPRO Server Side

The six desktop applications have no dependencies excepting having Java installed in the PC where they are installed.

The server side needs a dedicated server or a personal computer (PC) powered with RAM and hard disk space enough, a Linux operating system, and several Complex dependencies (third party software, databases and scripts). We have deployed the server side infraestructure into docker container to facilitate its installation. For more details about the server side and for downloading an image of the docker, please visit the GPRO Server Side site

THE SUITE 2.n

SeqEditor Download the last version
Desktop application for analysis of nucleotide and protein sequences that works either as a graphical sequence browser or as a multi-fasta task manager. SeqEditor includes a GTF/GFF viewer to manage annotation files and a toolkit for primer design and pooling.
RNAseq Download the last version
Desktop application to manage server side pipelines and workflows for differential expression and enrichment analysis based on State-of-the-Art software under two modes of execution; pipeline-like and Step-by-Step-like.
VariantSeq Download the last version
Desktop application to manage server side pipelines and workflows for characterization of SNPs and INDELS based on State-of-the-Art software under two modes of execution; pipeline-like and Step-by-Step-like.
DeNovoSeq (manual in preparation) Download the last version
Desktop application to manage pipelines and workflows for de novo assembly, annotation and functional analysis of genomic, transcriptomic and metatranscriptomic data
Worksheet (manual in preparation) Download the last version
Desktop application for knowledge discovery and interrogation of omic annotations
STATools (manual in preparation) Download the last version
Desktop application for statistic analysis and graphical representation hosted in the server side



GPRO licensing and Usage           Former versions

Biotechvana


Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
Contact us
Phone: +34 960 06 74 93
Email: biotechvana@biotechvana.com

Supported by


Hipra Scientific S.L.U, Polypeptide Therapeutic Solutions S.L., Biotechvana S.L. and Nostrum Biodiscovery constitute the consortium of enterprises participating in the project "Research of a new vaccine for a human respiratory disease", granted by the CDTI (Center for Industrial Technological Development), and supported by the Ministry of Science and Innovation and financed by the European Union – NextGenerationEU. The main objective of this project is to design a safe immunogenic and effective vaccine against the respiratory syncytial virus.

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