The pipeline mode of “RNASeq” is a pipeline configuration system that let the user to execute all the steps of a pipeline, automatically one after the other. To perform a RNA-seq analysis using the pipeline mode, the user must access the RNAseq protocols tab of the Top menu and then select the option Pipeline Mode. Then a first pipeline interface will appear summarizing all currently available pipelines based on Command Line Interface (CLI) software offered by the Pipeline mode of “RNAseq”.
To perform an analysis using the pipeline mode, please go to
[ Transcripts Protocols → Pipeline Mode ] and follow Fig. 26
Using the pipeline mode you only need to select one pipeline from the list and then configure the experiment going to a set of nested interfaces to;